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- Consensus_CDS_Project abstract "The Consensus Coding Sequence Project is a collaboration between the National Center for Biotechnology Information, the European Bioinformatics Institute, the University of Santa Cruz, California and the Wellcome Trust Sanger Institute, to agree upon a consistent set of protein coding genes for humans and mice for public use. The CCDS gene sets have been arrived at by consensus of the different partners and they consist of over 17,000 human and over 16,800 mouse genes.The CCDS set is calculated following coordinated whole genome annotation updates carried out by the NCBI and Ensembl. Annotation updates represent genes that are defined by a mixture of manual curation and automated computational processing. The general process flow for defining the CCDS gene set includes:compare genome annotation results identify annotated coding regions that have identical location coordinates on the genome quality evaluation remove lower quality CDSs from the core set pending additional review among the collaboration groups. The CCDS set includes coding regions that are annotated as full-length (with an initiating ATG and valid stop-codon), can be translated from the genome without frameshifts, and use consensus splice-sites. The number and type of quality tests performed may be expanded in the future but includes analysis to identify putative pseudogenes, retrotransposed genes, consensus splice sites, supporting transcripts, and protein homology.".
- Consensus_CDS_Project title "CCDS Project".
- Consensus_CDS_Project wikiPageExternalLink CcdsBrowse.cgi.
- Consensus_CDS_Project wikiPageID "30625026".
- Consensus_CDS_Project wikiPageRevisionID "581531433".
- Consensus_CDS_Project author "Pruitt KD".
- Consensus_CDS_Project center European_Bioinformatics_Institute.
- Consensus_CDS_Project center National_Center_for_Biotechnology_Information.
- Consensus_CDS_Project center University_of_California,_Santa_Cruz.
- Consensus_CDS_Project center Wellcome_Trust_Sanger_Institute.
- Consensus_CDS_Project description "Consensus of protein coding regions".
- Consensus_CDS_Project hasPhotoCollection Consensus_CDS_Project.
- Consensus_CDS_Project pmid "Pruitt et al.".
- Consensus_CDS_Project released "2009".
- Consensus_CDS_Project title "CCDS Project".
- Consensus_CDS_Project url CcdsBrowse.cgi.
- Consensus_CDS_Project description "Consensus of protein coding regions".
- Consensus_CDS_Project subject Category:Biological_databases.
- Consensus_CDS_Project type BiologicalDatabase.
- Consensus_CDS_Project type Database.
- Consensus_CDS_Project type Work.
- Consensus_CDS_Project type CreativeWork.
- Consensus_CDS_Project type InformationEntity.
- Consensus_CDS_Project type InformationObject.
- Consensus_CDS_Project comment "The Consensus Coding Sequence Project is a collaboration between the National Center for Biotechnology Information, the European Bioinformatics Institute, the University of Santa Cruz, California and the Wellcome Trust Sanger Institute, to agree upon a consistent set of protein coding genes for humans and mice for public use.".
- Consensus_CDS_Project label "Consensus CDS Project".
- Consensus_CDS_Project sameAs m.051wryb.
- Consensus_CDS_Project sameAs Q5162836.
- Consensus_CDS_Project sameAs Q5162836.
- Consensus_CDS_Project wasDerivedFrom Consensus_CDS_Project?oldid=581531433.
- Consensus_CDS_Project homepage CcdsBrowse.cgi.
- Consensus_CDS_Project isPrimaryTopicOf Consensus_CDS_Project.