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- VADAR abstract "VADAR (Volume, Area, Dihedral Angle Reporter) is a free protein structure validation web server using 15 different algorithms and programs for analyzing and assessing peptide and protein structures from their PDB coordinate data. VADAR is capable of determining secondary structure (3 different algorithms), identifying and classifying beta turns, determining and calculating the strength of hydrogen bonds, calculating residue-specific accessible surface area, calculating residue volumes, determining backbone torsion angles, assessing local structure quality (through numerous indices), assessing global structure quality and identifying residue “outliers” (residues with unusual structural features). The results have been validated through extensive comparison to published data and careful visual inspection. VADAR produces both text and graphical output with most of the quantitative data presented in text tables.".
- VADAR thumbnail Vadar_logo.jpg?width=300.
- VADAR wikiPageExternalLink vadar.wishartlab.com.
- VADAR wikiPageID "42639015".
- VADAR wikiPageRevisionID "606796417".
- VADAR center "University of Alberta and The Metabolomics Innovation Centre".
- VADAR curation "Manually curated".
- VADAR description "Structure Validation Server".
- VADAR format "Data Input: PDB coordinate file; Data Output: Text and graphical data on protein structure features and quality".
- VADAR frequency "-6.31152E7".
- VADAR laboratory "Dr. David Wishart".
- VADAR logo "260".
- VADAR url vadar.wishartlab.com.
- VADAR description "Structure Validation Server".
- VADAR subject Category:Bioinformatics.
- VADAR subject Category:Software.
- VADAR type BiologicalDatabase.
- VADAR type Database.
- VADAR type Work.
- VADAR type CreativeWork.
- VADAR type InformationEntity.
- VADAR type InformationObject.
- VADAR comment "VADAR (Volume, Area, Dihedral Angle Reporter) is a free protein structure validation web server using 15 different algorithms and programs for analyzing and assessing peptide and protein structures from their PDB coordinate data.".
- VADAR label "VADAR".
- VADAR sameAs m.010glhb0.
- VADAR wasDerivedFrom VADAR?oldid=606796417.
- VADAR depiction Vadar_logo.jpg.
- VADAR homepage vadar.wishartlab.com.
- VADAR isPrimaryTopicOf VADAR.