Matches in UGent Biblio for { <https://biblio.ugent.be/publication/1038788#aggregation> ?p ?o. }
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- aggregation classification "A1".
- aggregation creator B172756.
- aggregation creator B172757.
- aggregation creator B172758.
- aggregation creator B172759.
- aggregation creator B172760.
- aggregation creator B172761.
- aggregation creator person.
- aggregation creator person.
- aggregation date "2010".
- aggregation format "application/pdf".
- aggregation hasFormat 1038788.bibtex.
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- aggregation hasFormat 1038788.doc.
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- aggregation isPartOf urn:issn:1471-2105.
- aggregation language "eng".
- aggregation rights "I have retained and own the full copyright for this publication".
- aggregation subject "Biology and Life Sciences".
- aggregation title "Flexible network reconstruction from relational databases with Cytoscape and CytoSQL".
- aggregation abstract "Background: Molecular interaction networks can be efficiently studied using network visualization software such as Cytoscape. The relevant nodes, edges and their attributes can be imported in Cytoscape in various file formats, or directly from external databases through specialized third party plugins. However, molecular data are often stored in relational databases with their own specific structure, for which dedicated plugins do not exist. Therefore, a more generic solution is presented. Results: A new Cytoscape plugin 'CytoSQL' is developed to connect Cytoscape to any relational database. It allows to launch SQL ('Structured Query Language') queries from within Cytoscape, with the option to inject node or edge features of an existing network as SQL arguments, and to convert the retrieved data to Cytoscape network components. Supported by a set of case studies we demonstrate the flexibility and the power of the CytoSQL plugin in converting specific data subsets into meaningful network representations. Conclusions: CytoSQL offers a unified approach to let Cytoscape interact with relational databases. Thanks to the power of the SQL syntax, this tool can rapidly generate and enrich networks according to very complex criteria. The plugin is available at http://www.ptools.ua.ac.be/CytoSQL.".
- aggregation authorList BK424469.
- aggregation volume "11".
- aggregation aggregates 2989842.
- aggregation isDescribedBy 1038788.
- aggregation similarTo 1471-2105-11-360.
- aggregation similarTo LU-1038788.