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- aggregation classification "A1".
- aggregation creator B407851.
- aggregation creator B407852.
- aggregation creator B407853.
- aggregation creator person.
- aggregation creator person.
- aggregation date "2012".
- aggregation format "application/pdf".
- aggregation hasFormat 2096969.bibtex.
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- aggregation isPartOf urn:issn:1535-3893.
- aggregation language "eng".
- aggregation rights "I have transferred the copyright for this publication to the publisher".
- aggregation subject "Biology and Life Sciences".
- aggregation title "Spectral clustering in peptidomics studies allows homology searching and modification profiling: HomClus, a versatile tool".
- aggregation abstract "Many genomes of nonmodel organisms are yet to be annotated. Peptidomics research on those organisms therefore cannot adopt the commonly used database-driven identification strategy, leaving the more difficult de novo sequencing approach as the only alternative. The reported tool uses the growing resources of publicly or in-house available fragmentation spectra and sequences of (model) organisms to elucidate the identity of peptides of experimental spectra of nonannotated species. Clustering algorithms are implemented to infer the identity of unknown peak lists based on their publicly or in-house available counterparts. The reported tool, which we call the HomClus-tool, can cope with post-translational modifications and amino acid substitutions. We applied this tool on two locusts (Schistocerca gregaria and Locusta migratoria) LC-MALDI-TOF/TOF datasets. Compared to a Mascot database search (using the available UniProt-KB proteins of these species), we were able to double the amount of peptide identifications for both spectral sets. Known bioactive peptides from Drosophila melanogaster (i.e., fragmentations spectra generated in silico thereof) were used as a starting point for clustering, trying to reveal their experimental homologues' counterparts.".
- aggregation authorList BK722936.
- aggregation endPage "2785".
- aggregation issue "5".
- aggregation startPage "2774".
- aggregation volume "11".
- aggregation aggregates 2097594.
- aggregation aggregates 3000930.
- aggregation isDescribedBy 2096969.
- aggregation similarTo pr201114m.
- aggregation similarTo LU-2096969.