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- ALIL_pseudoknot abstract "ALIL pseudoknot is an RNA element that induces frameshifting in bacteria. The expression of a minority of genes requires frameshifting to occur where the frequency of frameshifting is increased by a RNA secondary structure located on the 3' side of the shift site. This structure can be either a pseudoknot or a stem-loop and acts as a physical barrier to mRNA translocation so therefore causes ribosome pausing.ALIL pseudoknot was identified though comparative analysis of the a class of transposable elements belonging to the insertion sequence 3 (IS3) family and is shown to be conserved across a number of bacteria species. This pseudoknot stimulates programmed -1 ribosomal frameshifting (PRF-1) which in turn stimulates the express of transposase, an enzyme required for transposition. Mutagenesis and chemical probing were used to determine the secondary structure of this pseudoknot and it has been proposed that this pseudoknot is formed by interactions between an apical loop and internal loop.".
- ALIL_pseudoknot thumbnail ALIL_pk.png?width=300.
- ALIL_pseudoknot wikiPageID "24211366".
- ALIL_pseudoknot wikiPageRevisionID "450466853".
- ALIL_pseudoknot caption "Secondary structure of ALIL without the pseudoknot".
- ALIL_pseudoknot hasPhotoCollection ALIL_pseudoknot.
- ALIL_pseudoknot id "RF01497".
- ALIL_pseudoknot name "ALIL pseudoknot".
- ALIL_pseudoknot rfam "RF01497".
- ALIL_pseudoknot rnaType "Cis-reg".
- ALIL_pseudoknot symbol "ALIL".
- ALIL_pseudoknot taxDomain "Bacteria".
- ALIL_pseudoknot subject Category:Bacteria.
- ALIL_pseudoknot subject Category:RNA.
- ALIL_pseudoknot type Bacteria.
- ALIL_pseudoknot type Bacteria101348530.
- ALIL_pseudoknot type LivingThing100004258.
- ALIL_pseudoknot type Microorganism101326291.
- ALIL_pseudoknot type Object100002684.
- ALIL_pseudoknot type Organism100004475.
- ALIL_pseudoknot type PhysicalEntity100001930.
- ALIL_pseudoknot type Whole100003553.
- ALIL_pseudoknot comment "ALIL pseudoknot is an RNA element that induces frameshifting in bacteria. The expression of a minority of genes requires frameshifting to occur where the frequency of frameshifting is increased by a RNA secondary structure located on the 3' side of the shift site.".
- ALIL_pseudoknot label "ALIL pseudoknot".
- ALIL_pseudoknot sameAs m.07kd5yt.
- ALIL_pseudoknot sameAs Q4652377.
- ALIL_pseudoknot sameAs Q4652377.
- ALIL_pseudoknot sameAs ALIL_pseudoknot.
- ALIL_pseudoknot wasDerivedFrom ALIL_pseudoknot?oldid=450466853.
- ALIL_pseudoknot depiction ALIL_pk.png.
- ALIL_pseudoknot isPrimaryTopicOf ALIL_pseudoknot.
