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- Avian_HBV_RNA_encapsidation_signal_epsilon abstract "The Avian HBV RNA encapsidation signal epsilon (AHBV_epsilon) is an RNA structure that is shown to facilitate encapsidation of the pregenomic RNA required for replication. There are two main classes of encapsidation signals in avian HBV viruses - Duck hepatitis B virus (DHBV) and Heron hepatitis B virus (HHBV) like. DHBV is used as a model to understand human HBV. Although studies have shown that the HHBV epsilon has less pairing in the upper stem than DHBV, this pairing is not absolutely required for DHBV infection in ducks. DHBV epsilon consists of a stem structure, a bulge and an apical loop (Fig. 1). The RNA structure was determined by chemical probing, NMR analysis and by mutagenesis.HHBV epsilon also consists of a stem structure, a bulge and an apical loop (Fig. 2). The RNA structure has been determined by chemical probing and by mutagenesis. However, it has less base pairing in the upper stem than DHBV epsilon. Recent NMR analysis of both the HHBV and DHBV epsilon have shown that the apical loop to be capped by a stable well-structured UGUU tetraloop.In the Rfam database a single covariation model (AHBV_epsilon box right) best discriminates between the true instances of the element in sequence databases and background. The secondary structure diagram is a computer generated view of the structure with highly conserved bases shown in red. It includes the major elements shown in Figures 1 and 2.".
- Avian_HBV_RNA_encapsidation_signal_epsilon thumbnail DHBV_epsilon.png?width=300.
- Avian_HBV_RNA_encapsidation_signal_epsilon wikiPageExternalLink family?entry=RF01313.
- Avian_HBV_RNA_encapsidation_signal_epsilon wikiPageID "19325688".
- Avian_HBV_RNA_encapsidation_signal_epsilon wikiPageRevisionID "602157817".
- Avian_HBV_RNA_encapsidation_signal_epsilon caption "Predicted secondary structure and sequence conservation of AHBV_epsilon".
- Avian_HBV_RNA_encapsidation_signal_epsilon hasPhotoCollection Avian_HBV_RNA_encapsidation_signal_epsilon.
- Avian_HBV_RNA_encapsidation_signal_epsilon id "RF01313".
- Avian_HBV_RNA_encapsidation_signal_epsilon name "AHBV_epsilon cis-regulatory RNA element".
- Avian_HBV_RNA_encapsidation_signal_epsilon name "Avian HBV RNA encapsidation signal epsilon".
- Avian_HBV_RNA_encapsidation_signal_epsilon rfam "RF01313".
- Avian_HBV_RNA_encapsidation_signal_epsilon rnaType Cis-regulatory_element.
- Avian_HBV_RNA_encapsidation_signal_epsilon symbol "AHBV_epsilon".
- Avian_HBV_RNA_encapsidation_signal_epsilon taxDomain "Viruses".
- Avian_HBV_RNA_encapsidation_signal_epsilon subject Category:Cis-regulatory_RNA_elements.
- Avian_HBV_RNA_encapsidation_signal_epsilon subject Category:Hepadnaviridae.
- Avian_HBV_RNA_encapsidation_signal_epsilon type Abstraction100002137.
- Avian_HBV_RNA_encapsidation_signal_epsilon type Cis-regulatoryRNAElements.
- Avian_HBV_RNA_encapsidation_signal_epsilon type Cognition100023271.
- Avian_HBV_RNA_encapsidation_signal_epsilon type Component105868954.
- Avian_HBV_RNA_encapsidation_signal_epsilon type Concept105835747.
- Avian_HBV_RNA_encapsidation_signal_epsilon type Content105809192.
- Avian_HBV_RNA_encapsidation_signal_epsilon type Idea105833840.
- Avian_HBV_RNA_encapsidation_signal_epsilon type Part105867413.
- Avian_HBV_RNA_encapsidation_signal_epsilon type PsychologicalFeature100023100.
- Avian_HBV_RNA_encapsidation_signal_epsilon comment "The Avian HBV RNA encapsidation signal epsilon (AHBV_epsilon) is an RNA structure that is shown to facilitate encapsidation of the pregenomic RNA required for replication. There are two main classes of encapsidation signals in avian HBV viruses - Duck hepatitis B virus (DHBV) and Heron hepatitis B virus (HHBV) like. DHBV is used as a model to understand human HBV.".
- Avian_HBV_RNA_encapsidation_signal_epsilon label "Avian HBV RNA encapsidation signal epsilon".
- Avian_HBV_RNA_encapsidation_signal_epsilon sameAs m.04lj191.
- Avian_HBV_RNA_encapsidation_signal_epsilon sameAs Q4828546.
- Avian_HBV_RNA_encapsidation_signal_epsilon sameAs Q4828546.
- Avian_HBV_RNA_encapsidation_signal_epsilon sameAs Avian_HBV_RNA_encapsidation_signal_epsilon.
- Avian_HBV_RNA_encapsidation_signal_epsilon wasDerivedFrom Avian_HBV_RNA_encapsidation_signal_epsilon?oldid=602157817.
- Avian_HBV_RNA_encapsidation_signal_epsilon depiction DHBV_epsilon.png.
- Avian_HBV_RNA_encapsidation_signal_epsilon isPrimaryTopicOf Avian_HBV_RNA_encapsidation_signal_epsilon.