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- Human_Metabolome_Database abstract "The Human Metabolome Database (HMDB) is a comprehensive, high-quality, freely accessible, online database of small molecule metabolites found in the human body. It was created by the Human Metabolome Project funded by Genome Canada. As one of the first dedicated metabolomics databases, the HMDB was designed to facilitate human metabolomics research, including the identification and characterization of human metabolites using NMR spectroscopy, GC-MS spectrometry and LC/MS spectrometry. To aid in this discovery process, the HMDB contains three kinds of data: 1) chemical data, 2) clinical data, and 3) molecular biology/biochemistry data (Fig. 1-3). The chemical data includes 41,514 metabolite structures with detailed descriptions along with nearly 10,000 NMR, GC-MS and LC/MS spectra. The clinical data includes information on >10,000 metabolite-biofluid concentrations and metabolite concentration information on more than 600 different human diseases. The biochemical data includes 5,688 protein (and DNA) sequences and more than 5000 biochemical reactions that are linked to these metabolite entries. Each metabolite entry in the HMDB contains more than 110 data fields with 2/3 of the information being devoted to chemical/clinical data and the other 1/3 devoted to enzymatic or biochemical data. Many data fields are hyperlinked to other databases (KEGG, MetaCyc, PubChem, Protein Data Bank, ChEBI, Swiss-Prot, and GenBank) and a variety of structure and pathway viewing applets. The HMDB database supports extensive text, sequence, spectral, chemical structure and relational query searches. It has been widely used in metabolomics, clinical chemistry, biomarker discovery and general biochemistry education.Four additional databases, DrugBank, T3DB, SMPDB and FooDB are also part of the HMDB suite of databases. DrugBank contains equivalent information on ~1600 drug and drug metabolites, T3DB contains information on 3100 common toxins and environmental pollutants, SMPDB contains pathway diagrams for 700 human metabolic and disease pathways, while FooDB contains equivalent information on ~28,000 food components and food additives.".
- Human_Metabolome_Database thumbnail HMDB_metabolite.png?width=300.
- Human_Metabolome_Database title "Human Metabolome Database".
- Human_Metabolome_Database wikiPageExternalLink drugbank.ca.
- Human_Metabolome_Database wikiPageExternalLink hmdb.ca.
- Human_Metabolome_Database wikiPageExternalLink smpdb.ca.
- Human_Metabolome_Database wikiPageExternalLink t3db.org.
- Human_Metabolome_Database wikiPageExternalLink wishartlab.com.
- Human_Metabolome_Database wikiPageExternalLink www.hmdb.ca.
- Human_Metabolome_Database wikiPageExternalLink downloads.
- Human_Metabolome_Database wikiPageExternalLink www.metabolomicscentre.ca.
- Human_Metabolome_Database wikiPageID "34333919".
- Human_Metabolome_Database wikiPageRevisionID "604434652".
- Human_Metabolome_Database center "University of Alberta and The Metabolomics Innovation Centre".
- Human_Metabolome_Database curation "Manually curated".
- Human_Metabolome_Database description "Metabolomics database".
- Human_Metabolome_Database download downloads.
- Human_Metabolome_Database frequency "6.31152E7".
- Human_Metabolome_Database hasPhotoCollection Human_Metabolome_Database.
- Human_Metabolome_Database laboratory "Dr. David Wishart".
- Human_Metabolome_Database pmid "HMDB: the Human Metabolome Database.".
- Human_Metabolome_Database scope "Human metabolite structures, metabolite descriptions, metabolite reactions, metabolite enzymes and transporters, human enzyme and transporter sequences, human metabolic pathways, normal and abnormal metabolite concentrations in humans, associated diseases, chemical properties, nomenclature, synonyms, chemical taxonomy, metabolite NMR spectra, metabolite GC-MS spectra, metabolite LC-MS spectra".
- Human_Metabolome_Database title "Human Metabolome Database".
- Human_Metabolome_Database url www.hmdb.ca.
- Human_Metabolome_Database description "Metabolomics database".
- Human_Metabolome_Database subject Category:Biological_databases.
- Human_Metabolome_Database subject Category:Medical_databases.
- Human_Metabolome_Database subject Category:Metabolomic_databases.
- Human_Metabolome_Database subject Category:Food_databases.
- Human_Metabolome_Database type BiologicalDatabase.
- Human_Metabolome_Database type Database.
- Human_Metabolome_Database type Work.
- Human_Metabolome_Database type CreativeWork.
- Human_Metabolome_Database type InformationEntity.
- Human_Metabolome_Database type InformationObject.
- Human_Metabolome_Database comment "The Human Metabolome Database (HMDB) is a comprehensive, high-quality, freely accessible, online database of small molecule metabolites found in the human body. It was created by the Human Metabolome Project funded by Genome Canada. As one of the first dedicated metabolomics databases, the HMDB was designed to facilitate human metabolomics research, including the identification and characterization of human metabolites using NMR spectroscopy, GC-MS spectrometry and LC/MS spectrometry.".
- Human_Metabolome_Database label "Human Metabolome Database".
- Human_Metabolome_Database sameAs m.02r6655.
- Human_Metabolome_Database sameAs Q5937262.
- Human_Metabolome_Database sameAs Q5937262.
- Human_Metabolome_Database wasDerivedFrom Human_Metabolome_Database?oldid=604434652.
- Human_Metabolome_Database depiction HMDB_metabolite.png.
- Human_Metabolome_Database homepage www.hmdb.ca.
- Human_Metabolome_Database isPrimaryTopicOf Human_Metabolome_Database.
