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- LocDB abstract "LocDB is an expert-curated database that collects experimental annotations for the subcellular localization of proteins in Homo sapiens (human) and Arabidopsis thaliana (Weed). The database also contains predictions of subcellular localization from a variety of state-of-the-art prediction methods for all proteins with experimental information.Proteins are the fundamental functional components of cells. They are responsible for transforming genetic information into physical reality. These macromolecules mediate gene regulation, enzymatic catalysis, cellular metabolism, DNA replication, and transport of nutrients, recognition, and transmission of signals. The interpretation of this wealth of data to elucidate protein function in post-genomic era is the a fundamental challenge. To date, even for the most well-studied organisms such as yeast, about one-fourth of the proteins remain uncharacterized. A major obstacle in experimentally determining protein function is that the studies require enormous resources. Hence, the gap between the amount of sequences deposited in databases and the experimental characterization of the corresponding proteins is ever-growing. Bioinformatics plays a central role in bridging this sequence-function gap through the development of tools for faster and more effective prediction of protein function. This repository effectively fills the gap between experimental annotations and predictions and provides a bigger and more reliable dataset for the testing of new prediction methods.".
- LocDB thumbnail Database.png?width=300.
- LocDB title "LocDB".
- LocDB wikiPageExternalLink www.predictprotein.org.
- LocDB wikiPageExternalLink locDB.
- LocDB wikiPageExternalLink search.php.
- LocDB wikiPageExternalLink Loctree.
- LocDB wikiPageExternalLink PredictNLS.
- LocDB wikiPageExternalLink Protein_Localization.
- LocDB wikiPageID "31312165".
- LocDB wikiPageRevisionID "592307326".
- LocDB author "Shruti Rastogi".
- LocDB center Columbia_University.
- LocDB description "experimental annotations of localization".
- LocDB format "MySQL database".
- LocDB hasPhotoCollection LocDB.
- LocDB laboratory "Department of Biochemistry and Molecular Biophysics".
- LocDB logo File:Database.png.
- LocDB organism Arabidopsis_thaliana.
- LocDB organism Homo_sapiens.
- LocDB pmid "Rastogi & al.".
- LocDB released "2010".
- LocDB title "LocDB".
- LocDB url locDB.
- LocDB version "Release 1.0".
- LocDB webservice search.php.
- LocDB description "experimental annotations of localization".
- LocDB subject Category:Biological_databases.
- LocDB subject Category:Protein_targeting.
- LocDB subject Category:Proteins.
- LocDB type Abstraction100002137.
- LocDB type Chemical114806838.
- LocDB type Compound114818238.
- LocDB type Macromolecule114944888.
- LocDB type Material114580897.
- LocDB type Matter100020827.
- LocDB type Molecule114682133.
- LocDB type OrganicCompound114727670.
- LocDB type Part113809207.
- LocDB type PhysicalEntity100001930.
- LocDB type Protein114728724.
- LocDB type Proteins.
- LocDB type Relation100031921.
- LocDB type Substance100019613.
- LocDB type Thing100002452.
- LocDB type Unit109465459.
- LocDB type BiologicalDatabase.
- LocDB type Database.
- LocDB type Work.
- LocDB type CreativeWork.
- LocDB type InformationEntity.
- LocDB type InformationObject.
- LocDB comment "LocDB is an expert-curated database that collects experimental annotations for the subcellular localization of proteins in Homo sapiens (human) and Arabidopsis thaliana (Weed). The database also contains predictions of subcellular localization from a variety of state-of-the-art prediction methods for all proteins with experimental information.Proteins are the fundamental functional components of cells. They are responsible for transforming genetic information into physical reality.".
- LocDB label "LocDB".
- LocDB sameAs m.0gjcdvb.
- LocDB sameAs Q6663909.
- LocDB sameAs Q6663909.
- LocDB sameAs LocDB.
- LocDB wasDerivedFrom LocDB?oldid=592307326.
- LocDB depiction Database.png.
- LocDB homepage locDB.
- LocDB isPrimaryTopicOf LocDB.
