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• Mammalian_promoter_database abstract "MPromDb (Mammalian Promoter Database) is a curated database of gene promoters identified from ChIP-seq The proximal promoter region (upstream of the core-promoter region) contains the cis-regulatory elements of most of the transcription factors (TFs). Recently a better approach to annotate active promoters has been demonstrated with a combination of ChIP-seq and computational technique. This technique has been used to find the target genes of TFs in mammalian systems. The MPromDb is based on this technology. Curated promoter sequences for eukaryotic organisms are provided by EPD database, however, promoter activity information at tissue/ cell centric level is not offered. The MPromDb data base added active RNAP-II promoters identified after analyzing ten different mouse cell/tissue ChIP-seq experiments performed with RNAP-II antibody and six different human cell types. The datas were got by a series of computational methods followed by manual correct to ensure its high level quality. In the newest version of MPromDb, about 507 million uniquely aligned RNA Pol-II ChIP-seq reads have already been analyzed from 26 different databases, including six human cell-types and 10 distinct mouse cell/tissues.".
• Mammalian_promoter_database thumbnail Database.png?width=300.
• Mammalian_promoter_database title "MPromDb".
• Mammalian_promoter_database wikiPageExternalLink MPromDb.
• Mammalian_promoter_database wikiPageExternalLink promoter.cdb.riken.jp.
• Mammalian_promoter_database wikiPageID "31113866".
• Mammalian_promoter_database wikiPageRevisionID "592349516".
• Mammalian_promoter_database author "Ravi Gupta".
• Mammalian_promoter_database description "annotation and visualization of mammalian gene promoters and ChIP-seq experimental data.".
• Mammalian_promoter_database hasPhotoCollection Mammalian_promoter_database.
• Mammalian_promoter_database laboratory "Center for Systems and Computational Biology, Molecular and Cellular Oncogenesis Program, The Wistar Institute, Philadelphia, PA, USA.".
• Mammalian_promoter_database logo File:Database.png.
• Mammalian_promoter_database pmid "Gupta & al.".
• Mammalian_promoter_database released "2010".
• Mammalian_promoter_database title "MPromDb".
• Mammalian_promoter_database url MPromDb.
• Mammalian_promoter_database description "annotation and visualization of mammalian gene promoters and ChIP-seq experimental data.".
• Mammalian_promoter_database subject Category:Biological_databases.
• Mammalian_promoter_database subject Category:Gene_expression.
• Mammalian_promoter_database subject Category:Protein_methods.
• Mammalian_promoter_database type Ability105616246.
• Mammalian_promoter_database type Abstraction100002137.
• Mammalian_promoter_database type Cognition100023271.
• Mammalian_promoter_database type Know-how105616786.
• Mammalian_promoter_database type Method105660268.
• Mammalian_promoter_database type ProteinMethods.
• Mammalian_promoter_database type PsychologicalFeature100023100.
• Mammalian_promoter_database type BiologicalDatabase.
• Mammalian_promoter_database type Database.
• Mammalian_promoter_database type Work.
• Mammalian_promoter_database type CreativeWork.
• Mammalian_promoter_database type InformationEntity.
• Mammalian_promoter_database type InformationObject.
• Mammalian_promoter_database comment "MPromDb (Mammalian Promoter Database) is a curated database of gene promoters identified from ChIP-seq The proximal promoter region (upstream of the core-promoter region) contains the cis-regulatory elements of most of the transcription factors (TFs). Recently a better approach to annotate active promoters has been demonstrated with a combination of ChIP-seq and computational technique. This technique has been used to find the target genes of TFs in mammalian systems.".
• Mammalian_promoter_database label "Mammalian promoter database".
• Mammalian_promoter_database sameAs m.0gh87jv.
• Mammalian_promoter_database sameAs Q6745756.
• Mammalian_promoter_database sameAs Q6745756.
• Mammalian_promoter_database sameAs Mammalian_promoter_database.
• Mammalian_promoter_database wasDerivedFrom Mammalian_promoter_database?oldid=592349516.
• Mammalian_promoter_database depiction Database.png.
• Mammalian_promoter_database homepage MPromDb.
• Mammalian_promoter_database isPrimaryTopicOf Mammalian_promoter_database.