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- Peak_calling abstract "Peak calling is a computational method used to identify areas in a genome that have been enriched with aligned reads as a consequence of performing a ChIP-sequencing or MeDIP-seq experiment. These areas are those where a protein interacts with DNA. When the protein is a transcription factor, the enriched area is its transcription factor binding site (TFBS). Popular software programs include MACS, etc.. Please see for a survey of the ChIP-seq peak callers, and for a description of practical guidelines for peak calling in ChIP-seq data.Peak calling may be conducted on transcriptome/exome as well to RNA epigenome sequencing data from MeRIPseq or m6Aseq for detection of post-transcriptional RNA modification sites with software programs, such as exomePeak.Many of the peak calling tools are optimised for only some kind of assays such as only for transcription-factor ChIP-seq or only for DNase-seq. However new generation of peak callers such as DFilter are based on generalised optimal theory of detection and has been shown to work for nearly all kinds for tag profile signal from next-gen. sequencing. it is also possible to do more complex analysis using such tools like combining multiple ChIP-seq signal to detect regulatory sites.".
- Peak_calling wikiPageID "31084685".
- Peak_calling wikiPageRevisionID "599954809".
- Peak_calling hasPhotoCollection Peak_calling.
- Peak_calling subject Category:Bioinformatics.
- Peak_calling subject Category:DNA_sequencing.
- Peak_calling subject Category:Molecular_biology.
- Peak_calling comment "Peak calling is a computational method used to identify areas in a genome that have been enriched with aligned reads as a consequence of performing a ChIP-sequencing or MeDIP-seq experiment. These areas are those where a protein interacts with DNA. When the protein is a transcription factor, the enriched area is its transcription factor binding site (TFBS). Popular software programs include MACS, etc..".
- Peak_calling label "Peak calling".
- Peak_calling label "Peak calling".
- Peak_calling sameAs m.0gg7rsn.
- Peak_calling sameAs Q7157848.
- Peak_calling sameAs Q7157848.
- Peak_calling wasDerivedFrom Peak_calling?oldid=599954809.
- Peak_calling isPrimaryTopicOf Peak_calling.