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- PhyloXML abstract "PhyloXML is an XML language for the analysis, exchange, and storage of phylogenetic trees (or networks) and associated data. The structure of phyloXML is described by XML Schema Definition (XSD) language.A shortcoming of current formats for describing phylogenetic trees (such as Nexus and Newick/New Hampshire) is a lack of a standardized means to annotate tree nodes and branches with distinct data fields (which in the case of a basic species tree might be: species names, branch lengths, and possibly multiple support values). Data storage and exchange is even more cumbersome in studies in which trees are the result of a reconciliation of some kind: gene-function studies (requires annotation of nodes with taxonomic information as well as gene names, and possibly gene-duplication data) evolution of host-parasite interactions (requires annotation of tree nodes with taxonomic information for both host and parasite) phylogeographic studies (requires annotation of tree nodes with taxonomic and geographic information)To alleviate this, a variety of ad-hoc, special purpose formats have come into use (such as the NHX format, which focuses on the needs of gene-function and phylogenomic studies).A well defined XML format addresses these problems in a general and extensible manner and allows for interoperability between specialized and general purpose software.An example of a program for visualizing phyloXML is Archaeopteryx.".
- PhyloXML wikiPageExternalLink archaeopteryx.
- PhyloXML wikiPageExternalLink www.phyloxml.org.
- PhyloXML wikiPageID "21356135".
- PhyloXML wikiPageRevisionID "577401898".
- PhyloXML hasPhotoCollection PhyloXML.
- PhyloXML subject Category:Bioinformatics.
- PhyloXML subject Category:Bioinformatics_software.
- PhyloXML subject Category:Computational_phylogenetics.
- PhyloXML subject Category:XML-based_standards.
- PhyloXML type Abstraction100002137.
- PhyloXML type Measure100033615.
- PhyloXML type Standard107260623.
- PhyloXML type SystemOfMeasurement113577171.
- PhyloXML type XML-basedStandards.
- PhyloXML comment "PhyloXML is an XML language for the analysis, exchange, and storage of phylogenetic trees (or networks) and associated data.".
- PhyloXML label "PhyloXML".
- PhyloXML sameAs m.05f4nlb.
- PhyloXML sameAs Q7189430.
- PhyloXML sameAs Q7189430.
- PhyloXML sameAs PhyloXML.
- PhyloXML wasDerivedFrom PhyloXML?oldid=577401898.
- PhyloXML isPrimaryTopicOf PhyloXML.