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- Popgenie abstract "Populus Genome Integrative Explorer (PopGenIE) is an integrated set of tools for exploring the genome and transcriptome of the model plant system Populus. PopGenie is a model organism database (MOD) which brings together the increasingly extensive collection of genetics and genomics data created by the scientific community in a central resource. Such MODs offer a single entry point to the collection of resources available within a model system, typically including tools for exploring and querying those resources. PopGenIE contains an integrated set of tools including genome, synteny and quantitative trait locus (QTL) browsers for exploring genetic data. Expression tools include an electronic fluorescent pictograph (eFP) browser, expression profile plots, co-regulation within collated transcriptomics data sets, and identification of over-represented functional categories and genomic hotspot locations. A number of collated transcriptomics data sets are available in the eFP browser to facilitate functional exploration of gene function. Additional homology and data extraction tools are provided. PopGenIE significantly increases accessibility to Populus genomics resources and allows exploration of transcriptomics data without the need to learn or understand complex statistical analysis methods.There are various tools(ePlant.eXplot,PopNet...) available in PopGenIE to analyse biological data. PopGenIE also archived their old versions. All tools are under MIT Licence.".
- Popgenie title "The Populus Genome Integrative Explorer (PopGenIE)".
- Popgenie wikiPageExternalLink api.popgenie.org.
- Popgenie wikiPageExternalLink popgenie.org.
- Popgenie wikiPageID "42022633".
- Popgenie wikiPageRevisionID "603418431".
- Popgenie center "Umeå Plant Science Centre".
- Popgenie description "A community resource for the Populus genome.".
- Popgenie download "ftp://popgenie.org/popgenie/".
- Popgenie hasPhotoCollection Popgenie.
- Popgenie license MIT_License.
- Popgenie organisms Populus.
- Popgenie pmid "Sjödin & al.".
- Popgenie released "2008".
- Popgenie title "The Populus Genome Integrative Explorer".
- Popgenie url popgenie.org.
- Popgenie version "Populus trichocarpa v3.0".
- Popgenie versioning "Populus trichocarpa v1.0/v2.0/v3.0".
- Popgenie webapp "GBrowse, JBrowse, DigitalNorthern, efp, ePlant, BLAST, BLAT, Insilico PCR, ExPlot, GOgraph".
- Popgenie webservice api.popgenie.org.
- Popgenie description "A community resource for the Populus genome.".
- Popgenie subject Category:Biological_databases.
- Popgenie type BiologicalDatabase.
- Popgenie type Database.
- Popgenie type Work.
- Popgenie type CreativeWork.
- Popgenie type InformationEntity.
- Popgenie type InformationObject.
- Popgenie comment "Populus Genome Integrative Explorer (PopGenIE) is an integrated set of tools for exploring the genome and transcriptome of the model plant system Populus. PopGenie is a model organism database (MOD) which brings together the increasingly extensive collection of genetics and genomics data created by the scientific community in a central resource.".
- Popgenie label "Popgenie".
- Popgenie sameAs m.0_v5h6p.
- Popgenie sameAs Q16335211.
- Popgenie sameAs Q16335211.
- Popgenie wasDerivedFrom Popgenie?oldid=603418431.
- Popgenie homepage popgenie.org.
- Popgenie isPrimaryTopicOf Popgenie.