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- Sequence_clustering abstract "In bioinformatics, sequence clustering algorithms attempt to group biological sequences that are somehow related. The sequences can be either of genomic, "transcriptomic" (ESTs) or protein origin.For proteins, homologous sequences are typically grouped into families. For EST data, clustering is important to group sequences originating from the same gene before the ESTs are assembled to reconstruct the original mRNA.Some clustering algorithms use single-linkage clustering, constructing a transitive closure of sequences with a similarity over a particular threshold. UCLUST and CD-HIT use a greedy algorithm that identifies a representative sequence for each cluster and assigns a new sequence to that cluster if it is sufficiently similar to the representative; if a sequence is not matched then it becomes the representative sequence for a new cluster. The similarity score is often based on sequence alignment. Sequence clustering is often used to make a non-redundant set of representative sequences.Sequence clusters are often synonymous with (but not identical to) protein families. Determining a representative tertiary structure for each sequence cluster is the aim of many structural genomics initiatives.".
- Sequence_clustering wikiPageExternalLink VOCS.
- Sequence_clustering wikiPageExternalLink BAG.
- Sequence_clustering wikiPageExternalLink skipredundant.html.
- Sequence_clustering wikiPageExternalLink clusterer.
- Sequence_clustering wikiPageExternalLink cd-hit.org.
- Sequence_clustering wikiPageExternalLink pisces.
- Sequence_clustering wikiPageExternalLink clustering.
- Sequence_clustering wikiPageExternalLink nrdb.
- Sequence_clustering wikiPageExternalLink netclust.
- Sequence_clustering wikiPageExternalLink usearch.
- Sequence_clustering wikiPageExternalLink clustr.
- Sequence_clustering wikiPageExternalLink nrdb90.
- Sequence_clustering wikiPageExternalLink icatools.
- Sequence_clustering wikiPageExternalLink jesam_paper.html.
- Sequence_clustering wikiPageExternalLink blastlab.html.
- Sequence_clustering wikiPageExternalLink uniref.
- Sequence_clustering wikiPageID "468117".
- Sequence_clustering wikiPageRevisionID "585782032".
- Sequence_clustering hasPhotoCollection Sequence_clustering.
- Sequence_clustering subject Category:Bioinformatics.
- Sequence_clustering comment "In bioinformatics, sequence clustering algorithms attempt to group biological sequences that are somehow related. The sequences can be either of genomic, "transcriptomic" (ESTs) or protein origin.For proteins, homologous sequences are typically grouped into families.".
- Sequence_clustering label "Sequence clustering".
- Sequence_clustering sameAs m.02d2__.
- Sequence_clustering sameAs Q7452462.
- Sequence_clustering sameAs Q7452462.
- Sequence_clustering wasDerivedFrom Sequence_clustering?oldid=585782032.
- Sequence_clustering isPrimaryTopicOf Sequence_clustering.