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- UCbase abstract "UCbase is a database of ultraconserved sequences (UCRs or UCEs) that were first described by Bejerano, G. et al. in 2004. They are highly conserved genome regions that share 100% identity among human, mouse and rat. UCRs are 481 sequences longer than 200 bases. They are frequently located at genomic regions involved in cancer, differentially expressed in human leukemias and carcinomas and in some instances regulated by microRNAs. The first release of UCbase was published by Taccioli, C. et al. in 2009. Recent updates include new annotation based on hg19 Human genome, information about disorders related to the chromosome coordinates using the SNOMED CT classification, a query tool to search for SNPs, and a new text box to directly interrogate the database using a MySQL interface. Moreover, a sequence comparison tool allows the researchers to match selected sequences against ultraconserved elements located in genomic regions involved in specific disorders. To facilitate the interactive, visual interpretation of UCR chromosomal coordinates, the authors have implemented the graph visualization feature of UCbase creating a link to UCSC genome browser. UCbase 2.0 does not provide microRNAs (miRNAs) information anymore focusing only on UCRs. The official release of UCbase 2.0 is accessible at http://ucbase.unimore.it".
- UCbase thumbnail Database.png?width=300.
- UCbase title "UCbase 2.0".
- UCbase wikiPageExternalLink ucbase.unimore.it.
- UCbase wikiPageExternalLink ultraconserved.org.
- UCbase wikiPageID "30497807".
- UCbase wikiPageRevisionID "595223820".
- UCbase author "Dr Cristian Taccioli, Ph.D".
- UCbase center "The Ohio State University".
- UCbase description "ultraconserved sequences database.".
- UCbase frequency "1.57788E7".
- UCbase hasPhotoCollection UCbase.
- UCbase laboratory "Professor Carlo M. Croce, MD".
- UCbase logo File:Database.png.
- UCbase organism Brown_rat.
- UCbase organism Homo_sapiens.
- UCbase organism House_mouse.
- UCbase pmid "Taccioli, C. et al.".
- UCbase released "2008".
- UCbase title "UCbase 2.0".
- UCbase url ucbase.unimore.it.
- UCbase description "ultraconserved sequences database.".
- UCbase subject Category:Biological_databases.
- UCbase subject Category:Computational_phylogenetics.
- UCbase subject Category:Conservation_biology.
- UCbase subject Category:Molecular_genetics.
- UCbase subject Category:Nucleic_acids.
- UCbase subject Category:Population_genetics.
- UCbase type Abstraction100002137.
- UCbase type Chemical114806838.
- UCbase type Compound114818238.
- UCbase type Macromolecule114944888.
- UCbase type Material114580897.
- UCbase type Matter100020827.
- UCbase type Molecule114682133.
- UCbase type NucleicAcid114964129.
- UCbase type NucleicAcids.
- UCbase type OrganicCompound114727670.
- UCbase type Part113809207.
- UCbase type PhysicalEntity100001930.
- UCbase type Relation100031921.
- UCbase type Substance100019613.
- UCbase type Thing100002452.
- UCbase type Unit109465459.
- UCbase type BiologicalDatabase.
- UCbase type Database.
- UCbase type Work.
- UCbase type CreativeWork.
- UCbase type InformationEntity.
- UCbase type InformationObject.
- UCbase comment "UCbase is a database of ultraconserved sequences (UCRs or UCEs) that were first described by Bejerano, G. et al. in 2004. They are highly conserved genome regions that share 100% identity among human, mouse and rat. UCRs are 481 sequences longer than 200 bases. They are frequently located at genomic regions involved in cancer, differentially expressed in human leukemias and carcinomas and in some instances regulated by microRNAs. The first release of UCbase was published by Taccioli, C. et al.".
- UCbase label "UCbase".
- UCbase sameAs m.0g9zy4j.
- UCbase sameAs Q7864201.
- UCbase sameAs Q7864201.
- UCbase sameAs UCbase.
- UCbase wasDerivedFrom UCbase?oldid=595223820.
- UCbase depiction Database.png.
- UCbase homepage ucbase.unimore.it.
- UCbase isPrimaryTopicOf UCbase.