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- YMDB abstract "The Yeast Metabolome Database (YMDB) is a comprehensive, high-quality, freely accessible, online database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (Baker’s yeast). The YMDB was designed to facilitate yeast metabolomics research, specifically in the areas of general fermentation as well as wine, beer and fermented food analysis. YMDB supports the identification and characterization of yeast metabolites using NMR spectroscopy, GC-MS spectrometry and Liquid chromatography–mass spectrometry (LC-MS spectrometry). The YMDB contains two kinds of data: 1) chemical data and 2) molecular biology/biochemistry data. The chemical data includes 2027 metabolite structures with detailed metabolite descriptions along with nearly 4000 NMR, GC-MS and LC/MS spectra. The biochemical data includes 1104 protein (and DNA) sequences and more than 900 biochemical reactions (Fig. 1) that are linked to these metabolite entries. Each metabolite entry in the YMDB contains more than 80 data fields with 2/3 of the information being devoted to chemical data and the other 1/3 devoted to enzymatic or biochemical data. Many data fields are hyperlinked to other databases (KEGG, PubChem, MetaCyc, ChEBI, Protein Data Bank, UniProt, and GenBank) and a variety of structure and pathway viewing applets. The YMDB database supports extensive text, sequence, spectral, chemical structure and relational query searches.".
- YMDB thumbnail YMDB_logo.png?width=300.
- YMDB wikiPageExternalLink www.panamp.ca.
- YMDB wikiPageExternalLink www.ymdb.ca.
- YMDB wikiPageExternalLink www.ymdb.ca.
- YMDB wikiPageExternalLink downloads.
- YMDB wikiPageID "41989740".
- YMDB wikiPageRevisionID "603612224".
- YMDB center "University of Alberta and The Metabolomics Innovation Centre".
- YMDB curation "Manually curated".
- YMDB description "Metabolomics database".
- YMDB download downloads.
- YMDB frequency "-9.46728E7".
- YMDB laboratory "Dr. David Wishart".
- YMDB logo "300".
- YMDB pmid "The Yeast Metabolome Database.".
- YMDB scope "Yeast metabolite structures, metabolite descriptions, metabolite reactions, metabolite enzymes and transporters, yeast enzyme and transporter sequences, chemical properties, nomenclature, synonyms, chemical taxonomy, metabolite NMR spectra, metabolite GC-MS spectra, metabolite LC-MS spectra".
- YMDB url www.ymdb.ca.
- YMDB description "Metabolomics database".
- YMDB subject Category:Biological_databases.
- YMDB subject Category:Medical_databases.
- YMDB subject Category:Metabolomic_databases.
- YMDB subject Category:Food_databases.
- YMDB type BiologicalDatabase.
- YMDB type Database.
- YMDB type Work.
- YMDB type CreativeWork.
- YMDB type InformationEntity.
- YMDB type InformationObject.
- YMDB comment "The Yeast Metabolome Database (YMDB) is a comprehensive, high-quality, freely accessible, online database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (Baker’s yeast). The YMDB was designed to facilitate yeast metabolomics research, specifically in the areas of general fermentation as well as wine, beer and fermented food analysis.".
- YMDB label "YMDB".
- YMDB sameAs m.0_r_l82.
- YMDB sameAs Q17090939.
- YMDB sameAs Q17090939.
- YMDB wasDerivedFrom YMDB?oldid=603612224.
- YMDB depiction YMDB_logo.png.
- YMDB homepage www.ymdb.ca.
- YMDB isPrimaryTopicOf YMDB.
