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- YjdF_RNA_motif abstract "The yjdF RNA motif is a conserved RNA structure identified using bioinformatics. Most yjdF RNAs are located in bacteria classified within the phylum Firmicutes. A yjdF RNA is found in the presumed 5' untranslated region (5' UTR) of the yjdF gene in Bacillus subtilis, and almost all yjdF RNAs are found in the 5' UTRs of homologs of this gene. The function of the yjdF gene is unknown, but the protein that it is predicted to encode is classified by the Pfam Database as DUF2992.The moderately complex secondary structure and nucleotide positions conserved in the yjdF RNA motif and the fact that it is likely to be present in 5' UTRs led to the hypothesis that yjdF RNAs function as riboswitches. One yjdF RNA is found instead in the presumed 5' UTR of genes encoding enzymes involved in the synthesis of nicotinamide adenine dinucleotide (NAD+). These RNAs lack a region of the otherwise conserved yjdF RNA motif and might be non-functional, or conform to a distinct structure that achieves the same function. If yjdF RNAs are riboswitches, this other RNA might bind a distinct small molecule ligand.Experiments support the conclusion that the yjdF RNA in B. subtilis is indeed in the 5' UTR of the yjdF gene, and that the yjdF genes are transcribed separately from the upstream manPA operon. The biochemical function of yjdF RNAs remains unknown.A number of other RNAs were identified in the same study, including:".
- YjdF_RNA_motif symbol "DUF2992".
- YjdF_RNA_motif thumbnail YjdF-RNA.svg?width=300.
- YjdF_RNA_motif wikiPageID "26953654".
- YjdF_RNA_motif wikiPageRevisionID "593342246".
- YjdF_RNA_motif hasPhotoCollection YjdF_RNA_motif.
- YjdF_RNA_motif id "RF01764".
- YjdF_RNA_motif name "Protein of unknown function".
- YjdF_RNA_motif name "yjdF RNA".
- YjdF_RNA_motif pfam "PF11208".
- YjdF_RNA_motif rfam "RF01764".
- YjdF_RNA_motif rnaType Cis-regulatory_element.
- YjdF_RNA_motif symbol "DUF2992".
- YjdF_RNA_motif symbol "yjdF".
- YjdF_RNA_motif taxDomain Bacteria.
- YjdF_RNA_motif subject Category:Cis-regulatory_RNA_elements.
- YjdF_RNA_motif type Abstraction100002137.
- YjdF_RNA_motif type Cis-regulatoryRNAElements.
- YjdF_RNA_motif type Cognition100023271.
- YjdF_RNA_motif type Component105868954.
- YjdF_RNA_motif type Concept105835747.
- YjdF_RNA_motif type Content105809192.
- YjdF_RNA_motif type Idea105833840.
- YjdF_RNA_motif type Part105867413.
- YjdF_RNA_motif type PsychologicalFeature100023100.
- YjdF_RNA_motif type Biomolecule.
- YjdF_RNA_motif type Protein.
- YjdF_RNA_motif type BiologicalObject.
- YjdF_RNA_motif comment "The yjdF RNA motif is a conserved RNA structure identified using bioinformatics. Most yjdF RNAs are located in bacteria classified within the phylum Firmicutes. A yjdF RNA is found in the presumed 5' untranslated region (5' UTR) of the yjdF gene in Bacillus subtilis, and almost all yjdF RNAs are found in the 5' UTRs of homologs of this gene.".
- YjdF_RNA_motif label "YjdF RNA motif".
- YjdF_RNA_motif sameAs m.0bs0jlb.
- YjdF_RNA_motif sameAs Q8053980.
- YjdF_RNA_motif sameAs Q8053980.
- YjdF_RNA_motif sameAs YjdF_RNA_motif.
- YjdF_RNA_motif wasDerivedFrom YjdF_RNA_motif?oldid=593342246.
- YjdF_RNA_motif depiction YjdF-RNA.svg.
- YjdF_RNA_motif isPrimaryTopicOf YjdF_RNA_motif.
